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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ChIP-seq
1
Hi-C
Assay category
7
DNA binding
1
3D chromatin structure
Target of assay
4
chromatin remodeller
4
transcription factor
3
histone
3
histone modification
2
RNA binding protein
2
broad histone mark
1
narrow histone mark
Date released
4
November, 2017
November, 2018
3
August, 2017
1
October, 2019
Available data
8
bigWig
7
bam
7
bed narrowPeak
7
bigBed narrowPeak
7
fastq
2
bed broadPeak
2
tagAlign
1
bed bed3+
1
bigBed broadPeak
1
hdf5
Organism
7
Homo sapiens
Biosample type
5
cell line
2
primary cell
1
tissue
Organ
4
liver
2
pancreas
Project
8
AMP
Genome assembly (visualization)
8
hg19
6
GRCh38
Lab
8
AMP-T2D consortium
Audit category:
4
missing controlled_by
Audit category:
51
inconsistent control read length
5
inconsistent control run_type
4
inconsistent assembly
month_released!
November, 2018
BIOSAMPLE
ASSAY
8 results
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ChIP-seq
Hi-C
cell line
HepG2
4
Panc1
1
primary cell
skeletal muscle myoblast
2
tissue
pancreas
1
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