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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
total RNA-seq
141
single cell RNA-seq
85
ChIP-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
338
Transcription
DNA accessibility
85
DNA binding
47
DNA methylation
4
3D chromatin structure
Target of assay
85
histone
85
histone modification
44
broad histone mark
41
narrow histone mark
Date released
153
May, 2021
86
February, 2023
74
May, 2022
56
September, 2020
47
September, 2023
45
May, 2020
18
February, 2021
9
April, 2020
March, 2020
5
March, 2023
3
October, 2022
Available data
181
bam
181
bigWig
132
fastq
102
tsv
93
zippedFastqFolder
85
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
492
Homo sapiens
Biosample type
424
primary cell
62
tissue
8
cell line
2
stem cell
Organ
109
pancreas
104
epithelium
47
kidney
9
lung
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
227
HPAP
208
T1D
47
KPMP
9
LungMap
4
community
1
ITG
Genome assembly (visualization)
184
hg19
182
GRCh38
Lab
227
Klaus Kaestner, Upenn
207
Kyle Gaulton, UCSD
47
KPMP
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
1
AMP-T2D consortium
1
ITG
Audit category:
6
inconsistent ontology term
3
audit script error
award.project!
AMP
assay_slims!
DNA accessibility
month_released!
March, 2020
BIOSAMPLE
ASSAY
496 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
Langerhans cell
85
pancreatic alpha cell
42
31
1
exocrine cell
39
pancreatic beta cell
11
16
1
+ See 36 more…
tissue
kidney
47
lung
9
islet of Langerhans
5
thymus
1
cell line
EndoC_BH1
1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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