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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
76
snATAC-seq
57
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
Transcription
133
DNA accessibility
88
DNA binding
47
DNA methylation
4
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
102
May, 2021
101
May, 2022
33
February, 2021
18
February, 2023
16
January, 2021
10
April, 2020
7
August, 2020
3
March, 2020
3
October, 2022
September, 2020
1
March, 2023
Available data
101
zippedFastqFolder
95
bigWig
88
bam
88
bed narrowPeak
84
tagAlign
40
fastq
6
tsv
4
hic
3
bedpe bed3+
3
cool
Organism
293
Homo sapiens
Biosample type
253
primary cell
34
tissue
7
cell line
Organ
121
pancreas
98
epithelium
10
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
144
HPAP
139
T1D
10
LungMap
1
ITG
Genome assembly (visualization)
96
GRCh38
91
hg19
Lab
144
Klaus Kaestner, Upenn
135
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
4
AMP-T2D consortium
1
ITG
Audit category:
30
audit script error
3
inconsistent ontology term
award.project!
AMP
assay_slims!
Transcription
month_released!
September, 2020
BIOSAMPLE
ASSAY
294 results
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ChIP-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
1
pancreatic alpha cell
27
31
1
Langerhans cell
48
pancreatic beta cell
15
16
1
peripheral blood mononuclear cell
8
+ See 16 more…
tissue
islet of Langerhans
2
6
11
lung
10
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
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