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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
141
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
342
Transcription
136
DNA accessibility
88
DNA binding
47
DNA methylation
3D chromatin structure
Date released
81
February, 2023
56
September, 2020
51
May, 2021
47
September, 2023
45
May, 2020
33
May, 2022
12
February, 2021
9
April, 2020
4
March, 2020
4
March, 2023
Available data
126
fastq
98
bam
98
bigWig
98
tsv
52
zippedFastqFolder
Organism
338
Homo sapiens
Biosample type
273
primary cell
63
tissue
4
cell line
2
stem cell
Organ
62
pancreas
55
epithelium
47
kidney
9
lung
Project
AMP
177
HPAP
105
T1D
47
KPMP
9
LungMap
4
community
Genome assembly (visualization)
98
GRCh38
98
hg19
Lab
177
Klaus Kaestner, Upenn
101
Kyle Gaulton, UCSD
47
KPMP
9
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
6
inconsistent ontology term
award.project!
AMP
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
342 results
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total RNA-seq
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
monocyte
53
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
+ See 24 more…
tissue
kidney
47
lung
9
islet of Langerhans
7
cell line
EndoC-BH1
1
1
EndoC_BH1
2
stem cell
SB Ad3.1
1
1
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