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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
total RNA-seq
85
single cell RNA-seq
84
ChIP-seq
56
snATAC-seq
ATAC-seq
47
WGBS
16
pCHi-C
4
Hi-C
Assay category
273
Transcription
84
DNA binding
56
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
151
May, 2021
95
May, 2022
76
February, 2023
56
September, 2020
45
February, 2021
45
May, 2020
8
January, 2021
3
October, 2022
1
March, 2023
Available data
180
bam
180
bigWig
159
fastq
114
zippedFastqFolder
102
tsv
84
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
480
Homo sapiens
Biosample type
480
primary cell
86
tissue
11
cell line
2
stem cell
Organ
103
epithelium
103
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
AMP
275
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
183
hg19
181
GRCh38
Lab
275
Klaus Kaestner, Upenn
204
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
5
inconsistent ontology term
award.project!
AMP
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
480 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
primary cell
monocyte
53
84
1
Langerhans cell
85
48
pancreatic alpha cell
42
31
1
exocrine cell
39
pancreatic beta cell
11
16
1
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