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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
single cell RNA-seq
135
total RNA-seq
66
snATAC-seq
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
280
Transcription
66
DNA accessibility
1
3D chromatin structure
Target of assay
84
histone
histone modification
44
broad histone mark
40
narrow histone mark
Date released
54
May, 2022
51
May, 2021
47
September, 2023
45
May, 2020
44
February, 2023
40
September, 2020
39
February, 2021
19
April, 2020
8
January, 2021
5
March, 2023
Available data
100
fastq
96
bam
96
bigWig
96
tsv
73
zippedFastqFolder
1
hic
Organism
347
Homo sapiens
Biosample type
277
primary cell
66
tissue
7
cell line
2
stem cell
Organ
pancreas
154
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
Project
AMP
172
HPAP
109
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
97
GRCh38
96
hg19
Lab
172
Klaus Kaestner, Upenn
109
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
1
ITG
Audit category:
27
audit script error
4
inconsistent ontology term
award.project!
AMP
assay_title!
pCHi-C
target.investigated_as!
histone modification
organ_slims!
pancreas
BIOSAMPLE
ASSAY
352 results
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single cell RNA-seq
total RNA-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
monocyte
53
exocrine cell
39
peripheral blood mononuclear cell
8
B cell
2
+ See 24 more…
tissue
kidney
47
lung
9
10
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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