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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
single cell RNA-seq
88
ChIP-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
136
DNA accessibility
88
DNA binding
47
DNA methylation
4
3D chromatin structure
4
Transcription
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
102
May, 2021
101
May, 2022
33
February, 2021
18
February, 2023
16
January, 2021
10
April, 2020
7
August, 2020
5
March, 2023
3
March, 2020
3
October, 2022
3
September, 2020
Available data
101
zippedFastqFolder
98
bigWig
88
bam
88
bed narrowPeak
84
tagAlign
43
fastq
6
tsv
4
hic
3
bedpe bed3+
3
cool
Organism
296
Homo sapiens
Biosample type
256
primary cell
34
tissue
9
cell line
2
stem cell
Organ
124
pancreas
101
epithelium
10
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
147
HPAP
139
T1D
10
LungMap
4
community
1
ITG
Genome assembly (visualization)
99
GRCh38
91
hg19
Lab
147
Klaus Kaestner, Upenn
135
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
3
inconsistent ontology term
award.project!
AMP
assay_title!
single cell RNA-seq
total RNA-seq
BIOSAMPLE
ASSAY
301 results
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ChIP-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
84
1
pancreatic alpha cell
29
31
1
Langerhans cell
48
pancreatic beta cell
16
16
1
peripheral blood mononuclear cell
8
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tissue
islet of Langerhans
2
6
11
lung
10
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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