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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
single cell RNA-seq
88
ChIP-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
76
DNA accessibility
4
3D chromatin structure
Date released
27
February, 2021
21
May, 2022
16
January, 2021
10
April, 2020
3
October, 2022
2
February, 2023
1
March, 2023
Available data
27
fastq
21
zippedFastqFolder
4
hic
3
bedpe bed3+
3
cool
Organism
79
Homo sapiens
Biosample type
60
primary cell
20
tissue
Organ
13
pancreas
10
lung
8
blood
8
bodily fluid
3
epithelium
Project
51
HPAP
AMP
18
T1D
10
LungMap
1
ITG
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
51
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
1
ITG
Audit category:
30
audit script error
award.project!
AMP
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
80 results
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snATAC-seq
Hi-C
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
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tissue
lung
10
islet of Langerhans
6
pancreas
4
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