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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
99
total RNA-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
136
DNA accessibility
103
Transcription
47
DNA methylation
1
3D chromatin structure
Date released
101
May, 2022
99
February, 2023
33
February, 2021
19
September, 2020
17
May, 2021
16
January, 2021
10
April, 2020
7
August, 2020
5
March, 2023
2
March, 2020
Available data
135
fastq
101
zippedFastqFolder
10
bigWig
6
tsv
1
hic
Organism
304
Homo sapiens
Biosample type
261
primary cell
39
tissue
7
cell line
2
stem cell
Organ
177
pancreas
149
epithelium
10
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
236
HPAP
58
T1D
10
LungMap
4
community
1
ITG
Genome assembly (visualization)
197
GRCh38
hg19
Lab
236
Klaus Kaestner, Upenn
56
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
AMP-T2D consortium
1
ITG
Audit category:
27
audit script error
1
inconsistent ontology term
award.project!
AMP
assay_title!
single cell RNA-seq
assembly!
hg19
BIOSAMPLE
ASSAY
309 results
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Clear Filters
total RNA-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
pancreatic alpha cell
42
29
31
Langerhans cell
48
pancreatic beta cell
11
16
16
exocrine cell
39
peripheral blood mononuclear cell
8
+ See 17 more…
tissue
islet of Langerhans
7
6
11
lung
10
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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