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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
total RNA-seq
single cell RNA-seq
86
ChIP-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
16
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
195
Transcription
136
DNA accessibility
86
DNA binding
47
DNA methylation
4
3D chromatin structure
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
151
May, 2021
101
May, 2022
99
February, 2023
41
May, 2020
33
February, 2021
19
September, 2020
16
January, 2021
10
April, 2020
7
August, 2020
5
March, 2023
4
March, 2020
3
October, 2022
Available data
188
bigWig
178
bam
135
fastq
101
zippedFastqFolder
98
tsv
86
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
484
Homo sapiens
Biosample type
439
primary cell
41
tissue
7
cell line
2
stem cell
Organ
182
pancreas
152
epithelium
10
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
239
HPAP
235
T1D
10
LungMap
4
community
1
ITG
Genome assembly (visualization)
189
GRCh38
181
hg19
Lab
239
Klaus Kaestner, Upenn
231
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
inconsistent ontology term
award.project!
AMP
assay_title!
single cell RNA-seq
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
489 results
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total RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
pancreatic alpha cell
42
29
31
1
Langerhans cell
48
pancreatic beta cell
11
16
16
1
exocrine cell
39
+ See 35 more…
tissue
islet of Langerhans
7
2
6
11
lung
10
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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