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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
total RNA-seq
single cell RNA-seq
86
ChIP-seq
76
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
146
Transcription
87
DNA accessibility
86
DNA binding
1
3D chromatin structure
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
152
May, 2021
62
February, 2023
45
May, 2020
27
February, 2021
21
May, 2022
16
January, 2021
10
April, 2020
5
March, 2023
4
March, 2020
Available data
182
bam
182
bigWig
96
tsv
86
bed narrowPeak
84
tagAlign
66
fastq
21
zippedFastqFolder
1
hic
Organism
337
Homo sapiens
Biosample type
292
primary cell
41
tissue
7
cell line
2
stem cell
Organ
186
pancreas
epithelium
10
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
240
T1D
87
HPAP
10
LungMap
4
community
1
ITG
Genome assembly (visualization)
183
GRCh38
182
hg19
Lab
236
Kyle Gaulton, UCSD
87
Klaus Kaestner, Upenn
10
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
27
audit script error
5
inconsistent ontology term
award.project!
AMP
assay_title!
single cell RNA-seq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
342 results
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total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
Langerhans cell
48
exocrine cell
39
peripheral blood mononuclear cell
8
B cell
2
1
+ See 34 more…
tissue
islet of Langerhans
7
2
6
11
lung
10
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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