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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
141
single cell RNA-seq
88
ChIP-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
141
Transcription
60
DNA accessibility
Date released
72
May, 2022
47
September, 2023
43
September, 2020
12
February, 2021
11
February, 2023
9
April, 2020
7
August, 2020
Available data
91
zippedFastqFolder
44
fastq
10
bigWig
Organism
201
Homo sapiens
Biosample type
134
primary cell
67
tissue
Organ
60
pancreas
49
epithelium
47
kidney
9
lung
Project
AMP
134
HPAP
47
KPMP
11
T1D
9
LungMap
Genome assembly (visualization)
10
GRCh38
Lab
134
Klaus Kaestner, Upenn
47
KPMP
11
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
award.project!
AMP
BIOSAMPLE
ASSAY
201 results
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single cell RNA-seq
ATAC-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
29
pancreatic beta cell
16
pancreatic acinar cell
4
tissue
kidney
47
islet of Langerhans
11
lung
9
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