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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
141
single cell RNA-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
4
ChIP-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
4
DNA binding
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
3
March, 2020
1
May, 2021
Available data
88
bam
88
bed narrowPeak
88
bigWig
tagAlign
Organism
4
Homo sapiens
Biosample type
2
cell line
2
tissue
Organ
4
pancreas
2
epithelium
Project
AMP
4
T1D
Genome assembly (visualization)
4
GRCh38
4
hg19
Lab
4
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
award.project!
AMP
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
4 results
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ChIP-seq
cell line
EndoC_BH1
2
tissue
islet of Langerhans
2
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