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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
single cell RNA-seq
99
total RNA-seq
47
WGBS
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
244
Transcription
DNA accessibility
47
DNA methylation
1
3D chromatin structure
Date released
86
February, 2023
74
May, 2022
56
September, 2020
47
September, 2023
18
February, 2021
17
May, 2021
9
April, 2020
5
March, 2023
2
March, 2020
Available data
132
fastq
93
zippedFastqFolder
6
tsv
1
hic
Organism
310
Homo sapiens
Biosample type
241
primary cell
64
tissue
7
cell line
2
stem cell
Organ
107
pancreas
100
epithelium
47
kidney
9
lung
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
224
HPAP
47
KPMP
29
T1D
9
LungMap
4
community
1
ITG
Genome assembly (visualization)
hg19
187
GRCh38
Lab
224
Klaus Kaestner, Upenn
47
KPMP
27
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
AMP-T2D consortium
1
ITG
Audit category:
1
inconsistent ontology term
award.project!
AMP
assembly!
hg19
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
314 results
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single cell RNA-seq
total RNA-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
42
31
exocrine cell
39
pancreatic beta cell
11
16
CD4-positive, alpha-beta T cell
2
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tissue
kidney
47
lung
9
islet of Langerhans
7
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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