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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
Assay category
Transcription
136
DNA accessibility
47
DNA methylation
1
3D chromatin structure
Date released
101
May, 2022
33
February, 2021
18
February, 2023
17
May, 2021
16
January, 2021
10
April, 2020
7
August, 2020
3
September, 2020
1
March, 2023
Available data
101
zippedFastqFolder
43
fastq
10
bigWig
6
tsv
1
hic
Organism
205
Homo sapiens
Biosample type
169
primary cell
32
tissue
5
cell line
Organ
117
pancreas
96
epithelium
10
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
144
HPAP
51
T1D
10
LungMap
1
ITG
Genome assembly (visualization)
99
GRCh38
hg19
Lab
144
Klaus Kaestner, Upenn
51
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
1
ITG
Audit category:
27
audit script error
1
inconsistent ontology term
award.project!
AMP
assembly!
hg19
assay_slims!
Transcription
BIOSAMPLE
ASSAY
206 results
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snATAC-seq
ATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
primary cell
pancreatic alpha cell
29
31
Langerhans cell
48
pancreatic beta cell
16
16
peripheral blood mononuclear cell
8
pancreatic acinar cell
4
+ See 16 more…
tissue
islet of Langerhans
6
11
lung
10
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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