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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
86
ChIP-seq
3
Hi-C
Assay category
92
Transcription
86
DNA binding
3
3D chromatin structure
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
135
May, 2021
41
May, 2020
3
October, 2022
2
March, 2020
Available data
178
bam
178
bigWig
92
tsv
86
bed narrowPeak
84
tagAlign
3
bedpe bed3+
3
cool
3
hic
Organism
181
Homo sapiens
Biosample type
179
primary cell
2
tissue
Organ
5
pancreas
3
epithelium
Project
AMP
178
T1D
3
HPAP
Genome assembly (visualization)
189
GRCh38
181
hg19
Lab
176
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
2
AMP-T2D consortium
Audit category:
inconsistent ontology term
3
audit script error
award.project!
AMP
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
181 results
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total RNA-seq
ChIP-seq
Hi-C
primary cell
monocyte
53
84
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 21 more…
tissue
islet of Langerhans
2
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