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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
86
ChIP-seq
85
single cell RNA-seq
snATAC-seq
49
ATAC-seq
47
WGBS
16
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
279
Transcription
86
DNA binding
49
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
152
May, 2021
113
May, 2022
81
February, 2023
59
September, 2020
45
May, 2020
18
February, 2021
7
August, 2020
5
March, 2023
3
March, 2020
3
October, 2022
Available data
194
bigWig
184
bam
142
fastq
132
zippedFastqFolder
104
tsv
86
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
482
Homo sapiens
Biosample type
473
primary cell
tissue
11
cell line
2
stem cell
Organ
156
epithelium
156
pancreas
1
bone element
1
bone marrow
1
connective tissue
Project
AMP
276
HPAP
205
T1D
4
community
1
ITG
Genome assembly (visualization)
195
GRCh38
187
hg19
Lab
276
Klaus Kaestner, Upenn
201
Kyle Gaulton, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
9
inconsistent ontology term
3
audit script error
award.project!
AMP
biosample_type!
tissue
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
486 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
pancreatic alpha cell
42
29
31
1
Langerhans cell
85
pancreatic beta cell
11
16
16
1
exocrine cell
39
+ See 36 more…
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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