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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
85
single cell RNA-seq
56
snATAC-seq
49
ATAC-seq
47
WGBS
16
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
279
Transcription
105
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Date released
134
May, 2022
81
February, 2023
67
May, 2021
59
September, 2020
45
February, 2021
45
May, 2020
8
January, 2021
7
August, 2020
5
March, 2023
3
October, 2022
2
March, 2020
Available data
194
bigWig
184
bam
169
fastq
153
zippedFastqFolder
104
tsv
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
452
Homo sapiens
Biosample type
445
primary cell
tissue
9
cell line
2
stem cell
Organ
154
epithelium
154
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
AMP
324
HPAP
127
T1D
4
community
1
ITG
Genome assembly (visualization)
109
GRCh38
101
hg19
Lab
324
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
4
Anna Gloyn, Oxford
2
AMP-T2D consortium
1
ITG
Audit category:
30
audit script error
7
inconsistent ontology term
award.project!
AMP
biosample_type!
tissue
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
456 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
monocyte
53
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
+ See 37 more…
cell line
EndoC_BH1
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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