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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
single cell RNA-seq
99
total RNA-seq
60
snATAC-seq
50
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
244
Transcription
110
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Date released
134
May, 2022
99
February, 2023
56
September, 2020
47
September, 2023
45
February, 2021
19
April, 2020
17
May, 2021
January, 2021
5
March, 2023
3
October, 2022
2
March, 2020
Available data
bigWig
186
bam
169
fastq
153
zippedFastqFolder
104
tsv
88
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
422
Homo sapiens
Biosample type
331
primary cell
87
tissue
7
cell line
2
stem cell
Organ
162
pancreas
142
epithelium
47
kidney
19
lung
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
314
HPAP
47
KPMP
42
T1D
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
314
Klaus Kaestner, Upenn
47
KPMP
40
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
AMP-T2D consortium
1
ITG
Audit category:
30
audit script error
1
inconsistent ontology term
award.project!
AMP
files.file_type!
bigWig
month_released!
January, 2021
BIOSAMPLE
ASSAY
427 results
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Clear Filters
single cell RNA-seq
total RNA-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
22
31
1
pancreatic beta cell
11
13
16
1
exocrine cell
39
pancreatic acinar cell
4
1
+ See 16 more…
tissue
kidney
47
islet of Langerhans
7
2
11
lung
9
10
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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