Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
single cell RNA-seq
83
total RNA-seq
76
snATAC-seq
50
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
188
Transcription
126
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Date released
134
May, 2022
99
February, 2023
September, 2020
47
September, 2023
45
February, 2021
19
April, 2020
17
May, 2021
16
January, 2021
5
March, 2023
3
October, 2022
2
March, 2020
Available data
bigWig
186
bam
134
zippedFastqFolder
128
fastq
104
tsv
88
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
382
Homo sapiens
Biosample type
283
primary cell
95
tissue
7
cell line
2
stem cell
Organ
154
pancreas
126
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
258
HPAP
58
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
258
Klaus Kaestner, Upenn
56
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
AMP-T2D consortium
1
ITG
Audit category:
30
audit script error
1
inconsistent ontology term
award.project!
AMP
files.file_type!
bigWig
month_released!
September, 2020
BIOSAMPLE
ASSAY
387 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
total RNA-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
45
48
pancreatic alpha cell
27
22
31
1
pancreatic beta cell
10
13
16
1
exocrine cell
39
peripheral blood mononuclear cell
8
+ See 17 more…
tissue
kidney
47
islet of Langerhans
7
6
11
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
Download