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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
single cell RNA-seq
105
total RNA-seq
88
ChIP-seq
ATAC-seq
49
snATAC-seq
41
WGBS
17
pCHi-C
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
216
Transcription
88
DNA binding
49
DNA accessibility
41
DNA methylation
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
95
May, 2022
47
September, 2023
45
May, 2020
19
April, 2020
18
September, 2020
16
January, 2021
12
February, 2023
7
March, 2020
4
March, 2023
Available data
186
bam
186
bigWig
fastq
114
zippedFastqFolder
104
tsv
88
bed narrowPeak
84
tagAlign
Organism
411
Homo sapiens
Biosample type
317
primary cell
86
tissue
11
cell line
2
stem cell
Organ
64
pancreas
47
kidney
45
epithelium
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
233
T1D
113
HPAP
47
KPMP
19
LungMap
4
community
Genome assembly (visualization)
186
GRCh38
186
hg19
Lab
225
Kyle Gaulton, UCSD
113
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
9
inconsistent ontology term
award.project!
AMP
files.file_type!
fastq
assay_title!
Hi-C
ATAC-seq
BIOSAMPLE
ASSAY
416 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
Langerhans cell
51
21
pancreatic alpha cell
25
pancreatic beta cell
16
peripheral blood mononuclear cell
8
+ See 34 more…
tissue
kidney
47
lung
9
10
islet of Langerhans
7
2
6
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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