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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
single cell RNA-seq
99
total RNA-seq
76
snATAC-seq
60
ATAC-seq
41
WGBS
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
3
ChIP-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
244
Transcription
136
DNA accessibility
41
DNA methylation
4
3D chromatin structure
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
134
May, 2022
May, 2021
99
February, 2023
59
September, 2020
47
September, 2023
39
February, 2021
19
April, 2020
16
January, 2021
7
August, 2020
5
March, 2020
5
March, 2023
3
October, 2022
Available data
169
fastq
153
zippedFastqFolder
60
bigWig
tsv
50
bam
4
hic
3
bed narrowPeak
3
bedpe bed3+
3
cool
Organism
428
Homo sapiens
Biosample type
327
primary cell
96
tissue
8
cell line
2
stem cell
Organ
177
pancreas
147
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
Project
AMP
318
HPAP
47
KPMP
44
T1D
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
14
GRCh38
6
hg19
Lab
318
Klaus Kaestner, Upenn
47
KPMP
39
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
5
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
1
inconsistent ontology term
award.project!
AMP
files.file_type!
tsv
month_released!
May, 2021
BIOSAMPLE
ASSAY
433 results
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Clear Filters
single cell RNA-seq
total RNA-seq
snATAC-seq
ATAC-seq
WGBS
Hi-C
CRISPR genome editing followed by DNA sequencing
ChIP-seq
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
25
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
peripheral blood mononuclear cell
8
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tissue
kidney
47
islet of Langerhans
7
6
11
2
lung
9
10
pancreas
4
cell line
EndoC_BH1
3
1
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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