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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
88
ChIP-seq
10
ATAC-seq
3
Hi-C
Assay category
98
Transcription
88
DNA binding
10
DNA accessibility
3
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
136
May, 2021
45
May, 2020
7
August, 2020
5
March, 2020
3
October, 2022
3
September, 2020
Available data
196
bigWig
186
bam
169
fastq
153
zippedFastqFolder
104
tsv
88
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
199
Homo sapiens
Biosample type
193
primary cell
4
cell line
2
tissue
Organ
19
pancreas
17
epithelium
Project
AMP
186
T1D
13
HPAP
Genome assembly (visualization)
196
GRCh38
189
hg19
Lab
180
Kyle Gaulton, UCSD
13
Klaus Kaestner, Upenn
6
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
3
audit script error
award.project!
AMP
BIOSAMPLE
ASSAY
199 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
primary cell
monocyte
53
84
pancreatic alpha cell
7
1
pancreatic beta cell
3
1
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 23 more…
cell line
EndoC_BH1
2
2
tissue
islet of Langerhans
2
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