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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
88
ChIP-seq
85
single cell RNA-seq
49
ATAC-seq
48
snATAC-seq
47
WGBS
Assay category
177
Transcription
97
DNA accessibility
88
DNA binding
47
DNA methylation
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
134
May, 2022
85
May, 2021
76
February, 2023
59
September, 2020
45
February, 2021
7
August, 2020
3
March, 2020
Available data
196
bigWig
186
bam
169
fastq
153
zippedFastqFolder
104
tsv
88
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
409
Homo sapiens
Biosample type
405
primary cell
2
cell line
2
tissue
Organ
153
pancreas
151
epithelium
Project
AMP
321
HPAP
88
T1D
Genome assembly (visualization)
98
GRCh38
88
hg19
Lab
321
Klaus Kaestner, Upenn
84
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
27
audit script error
2
inconsistent ontology term
award.project!
AMP
BIOSAMPLE
ASSAY
409 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
monocyte
84
pancreatic beta cell
11
16
16
exocrine cell
39
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cell line
EndoC_BH1
2
tissue
islet of Langerhans
2
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