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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
single cell RNA-seq
54
total RNA-seq
28
snATAC-seq
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
3
ChIP-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
114
Transcription
39
DNA accessibility
3
DNA binding
1
3D chromatin structure
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
May, 2021
47
September, 2023
45
May, 2020
23
February, 2023
19
April, 2020
16
January, 2021
7
March, 2020
5
March, 2023
Available data
50
bam
50
bigWig
47
tsv
3
bed narrowPeak
1
hic
Organism
157
Homo sapiens
Biosample type
96
tissue
54
primary cell
10
cell line
2
stem cell
Organ
47
kidney
33
pancreas
19
lung
8
blood
8
bodily fluid
3
epithelium
Project
AMP
91
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
51
GRCh38
50
hg19
Lab
Klaus Kaestner, Upenn
84
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
7
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
7
inconsistent ontology term
award.project!
AMP
lab.title!
Klaus Kaestner, Upenn
month_released!
May, 2021
BIOSAMPLE
ASSAY
162 results
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Clear Filters
single cell RNA-seq
total RNA-seq
snATAC-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
ChIP-seq
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney
47
islet of Langerhans
7
6
11
2
lung
9
10
pancreas
4
primary cell
peripheral blood mononuclear cell
8
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 22 more…
cell line
EndoC_BH1
2
3
1
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
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