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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
total RNA-seq
88
ChIP-seq
56
single cell RNA-seq
28
snATAC-seq
16
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
165
Transcription
88
DNA binding
39
DNA accessibility
1
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
152
May, 2021
47
September, 2023
45
May, 2020
23
February, 2023
19
April, 2020
16
January, 2021
7
March, 2020
5
March, 2023
Available data
186
bam
186
bigWig
98
tsv
88
bed narrowPeak
84
tagAlign
1
hic
Organism
309
Homo sapiens
Biosample type
205
primary cell
96
tissue
11
cell line
2
stem cell
Organ
47
kidney
34
pancreas
19
lung
8
blood
8
bodily fluid
4
epithelium
1
bone element
1
bone marrow
1
connective tissue
thymus
Project
AMP
243
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
187
GRCh38
186
hg19
Lab
Klaus Kaestner, Upenn
235
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
9
inconsistent ontology term
award.project!
AMP
lab.title!
Klaus Kaestner, Upenn
organ_slims!
thymus
BIOSAMPLE
ASSAY
314 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 32 more…
tissue
kidney
47
islet of Langerhans
7
2
6
11
lung
9
10
pancreas
4
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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