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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
single cell RNA-seq
96
total RNA-seq
58
snATAC-seq
49
ATAC-seq
4
ChIP-seq
4
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
241
Transcription
107
DNA accessibility
DNA methylation
4
3D chromatin structure
4
DNA binding
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
93
May, 2022
76
February, 2023
59
September, 2020
47
September, 2023
39
February, 2021
19
April, 2020
7
August, 2020
7
March, 2020
5
March, 2023
3
October, 2022
1
May, 2021
Available data
163
fastq
112
zippedFastqFolder
16
bigWig
6
bam
4
bed narrowPeak
4
hic
3
bedpe bed3+
3
cool
2
tsv
Organism
351
Homo sapiens
Biosample type
278
primary cell
70
tissue
6
cell line
2
stem cell
Organ
113
pancreas
109
epithelium
47
kidney
19
lung
Project
AMP
277
HPAP
47
KPMP
19
LungMap
8
T1D
4
community
1
ITG
Genome assembly (visualization)
17
GRCh38
9
hg19
Lab
277
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
4
inconsistent ontology term
award.project!
AMP
lab.title!
Kyle Gaulton, UCSD
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
356 results
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single cell RNA-seq
total RNA-seq
snATAC-seq
ATAC-seq
ChIP-seq
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
1
exocrine cell
39
pancreatic beta cell
11
16
1
pancreatic acinar cell
4
1
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tissue
kidney
47
lung
9
10
islet of Langerhans
2
2
cell line
EndoC_BH1
2
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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