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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
snATAC-seq
49
ATAC-seq
47
WGBS
4
ChIP-seq
4
Hi-C
Assay category
Transcription
107
DNA accessibility
47
DNA methylation
4
3D chromatin structure
4
DNA binding
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
101
May, 2022
33
February, 2021
10
April, 2020
7
August, 2020
3
March, 2020
3
October, 2022
3
September, 2020
1
March, 2023
1
May, 2021
Available data
101
zippedFastqFolder
43
fastq
14
bigWig
6
tsv
4
bam
4
bed narrowPeak
4
hic
3
bedpe bed3+
3
cool
Organism
161
Homo sapiens
Biosample type
148
primary cell
12
tissue
2
cell line
Organ
103
pancreas
101
epithelium
10
lung
Project
AMP
147
HPAP
10
LungMap
4
T1D
1
ITG
Genome assembly (visualization)
15
GRCh38
7
hg19
Lab
147
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
4
AMP-T2D consortium
1
ITG
Audit category:
30
audit script error
2
inconsistent ontology term
award.project!
AMP
lab.title!
Kyle Gaulton, UCSD
assay_slims!
Transcription
BIOSAMPLE
ASSAY
162 results
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snATAC-seq
ATAC-seq
WGBS
ChIP-seq
Hi-C
primary cell
pancreatic alpha cell
29
31
1
Langerhans cell
48
pancreatic beta cell
16
16
1
pancreatic acinar cell
4
1
chondrocytes
1
tissue
lung
10
islet of Langerhans
2
cell line
EndoC_BH1
2
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