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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
single cell RNA-seq
94
total RNA-seq
58
snATAC-seq
47
WGBS
39
ATAC-seq
3
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
239
Transcription
97
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
76
February, 2023
56
September, 2020
47
September, 2023
45
February, 2021
19
April, 2020
4
March, 2023
3
October, 2022
2
March, 2020
Available data
159
fastq
153
zippedFastqFolder
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
381
Homo sapiens
Biosample type
314
primary cell
68
tissue
2
cell line
2
stem cell
Organ
144
pancreas
142
epithelium
47
kidney
19
lung
Project
AMP
314
HPAP
47
KPMP
19
LungMap
4
community
2
T1D
Genome assembly (visualization)
GRCh38
9
hg19
Lab
314
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
AMP-T2D consortium
Audit category:
30
audit script error
award.project!
AMP
lab.title!
Kyle Gaulton, UCSD
assembly!
GRCh38
BIOSAMPLE
ASSAY
386 results
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single cell RNA-seq
total RNA-seq
snATAC-seq
WGBS
ATAC-seq
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
31
22
1
pancreatic beta cell
11
16
13
1
exocrine cell
39
pancreatic acinar cell
4
1
tissue
kidney
47
lung
9
10
islet of Langerhans
2
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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