Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
single cell RNA-seq
10
snATAC-seq
4
ChIP-seq
4
total RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
64
Transcription
10
DNA accessibility
4
DNA binding
1
3D chromatin structure
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
47
September, 2023
19
April, 2020
7
March, 2020
5
March, 2023
1
May, 2021
Available data
6
bam
6
bigWig
4
bed narrowPeak
2
tsv
1
hic
Organism
74
Homo sapiens
Biosample type
70
tissue
6
cell line
2
stem cell
1
primary cell
Organ
47
kidney
19
lung
8
pancreas
4
epithelium
Project
AMP
HPAP
47
KPMP
19
LungMap
8
T1D
4
community
1
ITG
Genome assembly (visualization)
7
GRCh38
6
hg19
Lab
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
4
inconsistent ontology term
award.project!
AMP
HPAP
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
79 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
snATAC-seq
ChIP-seq
total RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney
47
lung
9
10
islet of Langerhans
2
2
cell line
EndoC_BH1
2
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
primary cell
chondrocytes
1
Download