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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
single cell RNA-seq
94
total RNA-seq
58
snATAC-seq
49
ATAC-seq
41
WGBS
4
ChIP-seq
4
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
239
Transcription
107
DNA accessibility
41
DNA methylation
4
3D chromatin structure
4
DNA binding
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
134
May, 2022
76
February, 2023
59
September, 2020
47
September, 2023
39
February, 2021
19
April, 2020
7
August, 2020
5
March, 2020
5
March, 2023
3
October, 2022
1
May, 2021
Available data
169
fastq
153
zippedFastqFolder
16
bigWig
tsv
6
bam
4
bed narrowPeak
4
hic
3
bedpe bed3+
3
cool
Organism
390
Homo sapiens
Biosample type
319
primary cell
70
tissue
4
cell line
2
stem cell
Organ
152
pancreas
148
epithelium
47
kidney
19
lung
Project
AMP
318
HPAP
47
KPMP
19
LungMap
6
T1D
4
community
1
ITG
Genome assembly (visualization)
15
GRCh38
7
hg19
Lab
318
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
6
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
2
inconsistent ontology term
award.project!
AMP
lab.title!
Kyle Gaulton, UCSD
files.file_type!
tsv
BIOSAMPLE
ASSAY
395 results
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single cell RNA-seq
total RNA-seq
snATAC-seq
ATAC-seq
WGBS
ChIP-seq
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
25
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
pancreatic acinar cell
4
1
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tissue
kidney
47
lung
9
10
islet of Langerhans
2
2
cell line
EndoC-BH1
1
1
EndoC_BH1
2
stem cell
SB Ad3.1
1
1
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