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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
single cell RNA-seq
99
total RNA-seq
60
ATAC-seq
49
snATAC-seq
41
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
232
Transcription
109
DNA accessibility
41
DNA methylation
4
3D chromatin structure
Date released
134
May, 2022
99
February, 2023
59
September, 2020
47
September, 2023
February, 2021
19
April, 2020
17
May, 2021
16
January, 2021
7
August, 2020
5
March, 2023
3
October, 2022
2
March, 2020
Available data
196
bigWig
bam
153
zippedFastqFolder
124
fastq
98
tsv
88
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
403
Homo sapiens
Biosample type
304
primary cell
95
tissue
7
cell line
2
stem cell
Organ
174
pancreas
146
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
279
HPAP
58
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
11
GRCh38
3
hg19
Lab
279
Klaus Kaestner, Upenn
56
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
AMP-T2D consortium
1
ITG
Audit category:
3
audit script error
1
inconsistent ontology term
award.project!
AMP
month_released!
February, 2021
files.file_type!
bam
BIOSAMPLE
ASSAY
408 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
pancreatic alpha cell
42
29
25
1
Langerhans cell
73
21
pancreatic beta cell
11
16
16
1
exocrine cell
39
peripheral blood mononuclear cell
8
+ See 17 more…
tissue
kidney
47
islet of Langerhans
7
11
6
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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