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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
total RNA-seq
141
single cell RNA-seq
60
ATAC-seq
60
snATAC-seq
47
WGBS
42
ChIP-seq
17
pCHi-C
4
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
Assay category
338
Transcription
120
DNA accessibility
47
DNA methylation
42
DNA binding
4
3D chromatin structure
Target of assay
86
histone
86
histone modification
broad histone mark
42
narrow histone mark
Date released
134
May, 2022
108
May, 2021
94
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
19
April, 2020
January, 2021
7
August, 2020
4
March, 2020
3
March, 2023
3
October, 2022
Available data
169
fastq
153
zippedFastqFolder
148
bigWig
138
bam
102
tsv
42
bed narrowPeak
40
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
565
Homo sapiens
Biosample type
477
primary cell
89
tissue
cell line
2
stem cell
Organ
174
pancreas
152
epithelium
47
kidney
19
lung
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
324
HPAP
175
T1D
47
KPMP
19
LungMap
2
community
1
ITG
Genome assembly (visualization)
149
GRCh38
141
hg19
Lab
324
Klaus Kaestner, Upenn
171
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
AMP-T2D consortium
2
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
5
inconsistent ontology term
award.project!
AMP
month_released!
January, 2021
biosample_type!
cell line
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
568 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
monocyte
53
40
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
+ See 36 more…
tissue
kidney
47
islet of Langerhans
7
11
2
2
lung
9
10
thymus
1
stem cell
SB Ad3.1
1
1
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