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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
single cell RNA-seq
99
total RNA-seq
60
ATAC-seq
60
snATAC-seq
47
WGBS
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
244
Transcription
120
DNA accessibility
47
DNA methylation
1
3D chromatin structure
Date released
134
May, 2022
99
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
19
April, 2020
17
May, 2021
January, 2021
7
August, 2020
5
March, 2023
2
March, 2020
Available data
169
fastq
153
zippedFastqFolder
10
bigWig
6
tsv
1
hic
Organism
429
Homo sapiens
Biosample type
338
primary cell
87
tissue
7
cell line
2
stem cell
Organ
169
pancreas
149
epithelium
47
kidney
19
lung
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
321
HPAP
47
KPMP
42
T1D
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
197
GRCh38
hg19
Lab
321
Klaus Kaestner, Upenn
47
KPMP
40
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
AMP-T2D consortium
1
ITG
Audit category:
27
audit script error
1
inconsistent ontology term
award.project!
AMP
month_released!
January, 2021
files.file_type!
cool
assembly!
hg19
BIOSAMPLE
ASSAY
434 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
pancreatic beta cell
11
16
16
exocrine cell
39
pancreatic acinar cell
4
+ See 16 more…
tissue
kidney
47
islet of Langerhans
7
11
2
lung
9
10
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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