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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
single cell RNA-seq
101
total RNA-seq
85
ChIP-seq
50
ATAC-seq
49
snATAC-seq
41
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
212
Transcription
99
DNA accessibility
85
DNA binding
41
DNA methylation
4
3D chromatin structure
Target of assay
85
histone
85
histone modification
44
broad histone mark
41
narrow histone mark
Date released
153
May, 2021
134
May, 2022
47
September, 2023
45
May, 2020
23
February, 2023
19
April, 2020
18
September, 2020
16
January, 2021
March, 2020
5
March, 2023
3
October, 2022
Available data
191
bigWig
181
bam
fastq
153
zippedFastqFolder
102
tsv
85
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
458
Homo sapiens
Biosample type
360
primary cell
93
tissue
8
cell line
2
stem cell
Organ
110
pancreas
84
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
237
T1D
155
HPAP
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
184
hg19
182
GRCh38
Lab
236
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
1
AMP-T2D consortium
1
ITG
Audit category:
6
inconsistent ontology term
3
audit script error
award.project!
AMP
month_released!
March, 2020
files.file_type!
fastq
BIOSAMPLE
ASSAY
463 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
pancreatic beta cell
13
16
1
peripheral blood mononuclear cell
8
+ See 36 more…
tissue
kidney
47
islet of Langerhans
5
11
6
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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