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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
total RNA-seq
85
ChIP-seq
56
single cell RNA-seq
28
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
161
Transcription
85
DNA binding
39
DNA accessibility
1
3D chromatin structure
Target of assay
85
histone
85
histone modification
44
broad histone mark
41
narrow histone mark
Date released
153
May, 2021
47
September, 2023
45
May, 2020
23
February, 2023
19
April, 2020
16
January, 2021
March, 2020
5
March, 2023
Available data
181
bam
181
bigWig
96
tsv
85
bed narrowPeak
84
tagAlign
1
hic
Organism
303
Homo sapiens
Biosample type
205
primary cell
93
tissue
8
cell line
2
stem cell
Organ
47
kidney
27
pancreas
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
epithelium
1
thymus
Project
AMP
237
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
182
GRCh38
181
hg19
Lab
Klaus Kaestner, Upenn
236
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
1
AMP-T2D consortium
1
ITG
Audit category:
6
inconsistent ontology term
award.project!
AMP
month_released!
March, 2020
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
308 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 32 more…
tissue
kidney
47
islet of Langerhans
5
6
11
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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