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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
total RNA-seq
141
single cell RNA-seq
88
ChIP-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
152
Transcription
Date released
81
February, 2023
51
May, 2021
May, 2020
16
September, 2020
4
March, 2020
Available data
92
fastq
53
bam
53
bigWig
53
tsv
Organism
152
Homo sapiens
Biosample type
143
primary cell
7
tissue
2
cell line
Organ
62
pancreas
55
epithelium
Project
AMP
92
HPAP
60
T1D
Genome assembly (visualization)
53
GRCh38
53
hg19
Lab
92
Klaus Kaestner, Upenn
56
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
award.project!
AMP
month_released!
May, 2020
BIOSAMPLE
ASSAY
152 results
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total RNA-seq
primary cell
monocyte
51
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
tissue
islet of Langerhans
7
cell line
EndoC_BH1
2
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