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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
total RNA-seq
101
single cell RNA-seq
84
ChIP-seq
snATAC-seq
57
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
282
Transcription
84
DNA binding
57
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
152
May, 2021
113
May, 2022
97
February, 2023
September, 2020
47
September, 2023
45
May, 2020
18
February, 2021
9
April, 2020
7
August, 2020
5
March, 2023
3
October, 2022
Available data
187
bigWig
180
bam
113
zippedFastqFolder
102
tsv
101
fastq
84
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
492
Homo sapiens
Biosample type
414
primary cell
73
tissue
7
cell line
2
stem cell
Organ
149
pancreas
133
epithelium
47
kidney
9
lung
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
218
T1D
217
HPAP
47
KPMP
9
LungMap
4
community
1
ITG
Genome assembly (visualization)
188
GRCh38
183
hg19
Lab
218
Kyle Gaulton, UCSD
217
Klaus Kaestner, Upenn
47
KPMP
9
Xin Sun, UCSD
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
5
inconsistent ontology term
3
audit script error
award.project!
AMP
month_released!
September, 2020
assay_title!
snATAC-seq
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
496 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
pancreatic alpha cell
27
27
31
1
Langerhans cell
45
pancreatic beta cell
10
15
16
1
exocrine cell
39
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tissue
kidney
47
islet of Langerhans
5
11
lung
9
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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