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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
181
total RNA-seq
88
ChIP-seq
snATAC-seq
57
ATAC-seq
54
single cell RNA-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
239
Transcription
88
DNA binding
57
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
113
May, 2022
97
February, 2023
September, 2020
45
May, 2020
18
February, 2021
9
April, 2020
7
August, 2020
7
March, 2020
5
March, 2023
3
October, 2022
Available data
193
bigWig
186
bam
113
zippedFastqFolder
104
tsv
101
fastq
88
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
453
Homo sapiens
Biosample type
414
primary cell
30
tissue
11
cell line
2
stem cell
Organ
157
pancreas
137
epithelium
9
lung
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
226
T1D
217
HPAP
9
LungMap
4
community
1
ITG
Genome assembly (visualization)
194
GRCh38
189
hg19
Lab
218
Kyle Gaulton, UCSD
217
Klaus Kaestner, Upenn
KPMP
9
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
9
inconsistent ontology term
3
audit script error
award.project!
AMP
month_released!
September, 2020
assay_title!
snATAC-seq
lab.title!
KPMP
BIOSAMPLE
ASSAY
457 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
pancreatic alpha cell
27
27
31
1
Langerhans cell
45
pancreatic beta cell
10
15
16
1
exocrine cell
39
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tissue
islet of Langerhans
7
2
11
lung
9
thymus
1
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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