Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
total RNA-seq
101
single cell RNA-seq
84
ChIP-seq
76
snATAC-seq
57
ATAC-seq
47
WGBS
16
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
278
Transcription
133
DNA accessibility
84
DNA binding
47
DNA methylation
4
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
151
May, 2021
134
May, 2022
99
February, 2023
September, 2020
47
September, 2023
45
February, 2021
41
May, 2020
19
April, 2020
16
January, 2021
7
August, 2020
5
March, 2023
March, 2020
3
October, 2022
Available data
183
bigWig
176
bam
134
zippedFastqFolder
128
fastq
98
tsv
84
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
562
Homo sapiens
Biosample type
465
primary cell
93
tissue
7
cell line
2
stem cell
Organ
159
pancreas
133
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
265
HPAP
231
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
184
GRCh38
179
hg19
Lab
265
Klaus Kaestner, Upenn
231
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
inconsistent ontology term
award.project!
AMP
month_released!
September, 2020
March, 2020
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
567 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
Langerhans cell
45
48
pancreatic alpha cell
27
27
31
1
pancreatic beta cell
10
15
16
1
exocrine cell
39
+ See 35 more…
tissue
kidney
47
islet of Langerhans
5
6
11
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
Download