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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
135
total RNA-seq
101
single cell RNA-seq
84
ChIP-seq
66
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
240
Transcription
84
DNA binding
66
DNA accessibility
1
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
152
May, 2021
54
May, 2022
47
September, 2023
45
May, 2020
44
February, 2023
September, 2020
39
February, 2021
19
April, 2020
8
January, 2021
5
March, 2023
Available data
180
bam
180
bigWig
96
tsv
84
bed narrowPeak
84
tagAlign
78
fastq
54
zippedFastqFolder
1
hic
Organism
408
Homo sapiens
Biosample type
337
primary cell
67
tissue
7
cell line
2
stem cell
Organ
pancreas
134
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
210
T1D
132
HPAP
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
181
GRCh38
180
hg19
Lab
210
Kyle Gaulton, UCSD
132
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
1
ITG
Audit category:
27
audit script error
5
inconsistent ontology term
award.project!
AMP
month_released!
September, 2020
March, 2020
organ_slims!
pancreas
BIOSAMPLE
ASSAY
413 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
Langerhans cell
45
48
exocrine cell
39
peripheral blood mononuclear cell
8
B cell
2
1
+ See 34 more…
tissue
kidney
47
lung
9
10
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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