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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
51
total RNA-seq
16
pCHi-C
7
ATAC-seq
Assay category
84
DNA binding
51
Transcription
7
DNA accessibility
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
151
May, 2021
134
May, 2022
99
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
41
May, 2020
19
April, 2020
16
January, 2021
7
August, 2020
5
March, 2023
4
March, 2020
3
October, 2022
Available data
142
bigWig
135
bam
84
bed narrowPeak
84
tagAlign
51
tsv
7
fastq
Organism
158
Homo sapiens
Biosample type
157
primary cell
1
tissue
Organ
7
epithelium
7
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
151
T1D
7
HPAP
Genome assembly (visualization)
142
GRCh38
135
hg19
Lab
151
Kyle Gaulton, UCSD
7
Klaus Kaestner, Upenn
Audit category:
inconsistent ontology term
award.project!
AMP
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
158 results
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ChIP-seq
total RNA-seq
pCHi-C
ATAC-seq
primary cell
monocyte
84
51
1
pancreatic alpha cell
5
CD4-positive, alpha-beta T cell
2
pancreatic beta cell
2
B cell
1
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tissue
thymus
1
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