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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
51
total RNA-seq
27
snATAC-seq
17
pCHi-C
12
single cell RNA-seq
6
WGBS
Assay category
85
DNA binding
63
Transcription
27
DNA accessibility
6
DNA methylation
Target of assay
85
histone
85
histone modification
44
broad histone mark
41
narrow histone mark
Date released
153
May, 2021
134
May, 2022
99
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
7
August, 2020
7
March, 2020
5
March, 2023
3
October, 2022
Available data
136
bam
136
bigWig
85
bed narrowPeak
84
tagAlign
57
tsv
45
fastq
Organism
198
Homo sapiens
Biosample type
196
primary cell
1
cell line
1
tissue
Organ
7
epithelium
7
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
153
T1D
45
HPAP
Genome assembly (visualization)
136
GRCh38
136
hg19
Lab
152
Kyle Gaulton, UCSD
45
Klaus Kaestner, Upenn
1
AMP-T2D consortium
Audit category:
27
audit script error
2
inconsistent ontology term
award.project!
AMP
BIOSAMPLE
ASSAY
198 results
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ChIP-seq
total RNA-seq
snATAC-seq
pCHi-C
single cell RNA-seq
WGBS
primary cell
monocyte
84
51
1
Langerhans cell
27
12
pancreatic alpha cell
6
CD4-positive, alpha-beta T cell
2
B cell
1
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cell line
EndoC_BH1
1
tissue
thymus
1
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