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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
total RNA-seq
85
ChIP-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
Assay category
132
Transcription
85
DNA binding
13
DNA accessibility
Target of assay
85
histone
85
histone modification
44
broad histone mark
41
narrow histone mark
Date released
153
May, 2021
134
May, 2022
99
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
7
August, 2020
7
March, 2020
5
March, 2023
3
October, 2022
Available data
136
bam
136
bigWig
85
bed narrowPeak
84
tagAlign
76
fastq
51
tsv
Organism
252
Homo sapiens
Biosample type
227
primary cell
19
tissue
6
cell line
Organ
56
pancreas
38
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
176
T1D
76
HPAP
Genome assembly (visualization)
136
GRCh38
136
hg19
Lab
175
Kyle Gaulton, UCSD
76
Klaus Kaestner, Upenn
1
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
award.project!
AMP
BIOSAMPLE
ASSAY
252 results
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total RNA-seq
ChIP-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
primary cell
monocyte
51
84
1
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
CD4-positive, alpha-beta T cell
2
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tissue
islet of Langerhans
5
11
2
thymus
1
cell line
EndoC_BH1
1
3
2
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