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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
50
ATAC-seq
41
WGBS
33
single cell RNA-seq
23
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
114
Transcription
73
DNA accessibility
41
DNA methylation
Date released
153
May, 2021
134
May, 2022
99
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
7
August, 2020
7
March, 2020
5
March, 2023
3
October, 2022
Available data
134
zippedFastqFolder
76
fastq
Organism
233
Homo sapiens
Biosample type
210
primary cell
18
tissue
5
cell line
Organ
135
pancreas
117
epithelium
Project
210
HPAP
AMP
23
T1D
Lab
210
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
award.project!
AMP
BIOSAMPLE
ASSAY
233 results
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total RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
pancreatic alpha cell
27
22
25
Langerhans cell
33
21
exocrine cell
39
pancreatic beta cell
10
13
16
pancreatic acinar cell
4
tissue
islet of Langerhans
5
11
2
cell line
EndoC_BH1
3
2
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