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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
135
total RNA-seq
85
single cell RNA-seq
84
ChIP-seq
56
snATAC-seq
16
pCHi-C
1
Hi-C
Assay category
220
Transcription
84
DNA binding
56
DNA accessibility
1
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
151
May, 2021
54
May, 2022
45
May, 2020
40
September, 2020
39
February, 2021
39
February, 2023
8
January, 2021
1
March, 2023
Available data
180
bam
180
bigWig
100
fastq
96
tsv
84
bed narrowPeak
84
tagAlign
73
zippedFastqFolder
1
hic
Organism
377
Homo sapiens
Biosample type
377
primary cell
97
tissue
7
cell line
2
stem cell
Organ
epithelium
152
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
AMP
204
T1D
172
HPAP
1
ITG
Genome assembly (visualization)
181
GRCh38
180
hg19
Lab
204
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
27
audit script error
5
inconsistent ontology term
award.project!
AMP
organ_slims!
epithelium
BIOSAMPLE
ASSAY
377 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
Hi-C
primary cell
monocyte
53
84
1
Langerhans cell
85
48
exocrine cell
39
peripheral blood mononuclear cell
8
B cell
2
1
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