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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
135
total RNA-seq
108
single cell RNA-seq
84
ChIP-seq
45
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
247
Transcription
84
DNA binding
45
DNA accessibility
1
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
152
May, 2021
May, 2022
47
September, 2023
45
May, 2020
44
February, 2023
40
September, 2020
39
February, 2021
19
April, 2020
8
January, 2021
5
March, 2023
Available data
180
bam
180
bigWig
100
fastq
96
tsv
84
bed narrowPeak
84
tagAlign
19
zippedFastqFolder
1
hic
Organism
394
Homo sapiens
Biosample type
323
primary cell
67
tissue
7
cell line
2
stem cell
Organ
pancreas
76
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
210
T1D
118
HPAP
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
181
GRCh38
180
hg19
Lab
210
Kyle Gaulton, UCSD
118
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
1
ITG
Audit category:
27
audit script error
5
inconsistent ontology term
award.project!
AMP
organ_slims!
pancreas
month_released!
May, 2022
BIOSAMPLE
ASSAY
399 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
Langerhans cell
52
27
exocrine cell
39
peripheral blood mononuclear cell
8
B cell
2
1
+ See 34 more…
tissue
kidney
47
lung
9
10
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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