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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
total RNA-seq
21
ATAC-seq
10
snATAC-seq
6
WGBS
4
ChIP-seq
3
Hi-C
Assay category
62
Transcription
31
DNA accessibility
6
DNA methylation
4
DNA binding
3
3D chromatin structure
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
May, 2022
55
February, 2023
19
September, 2020
8
January, 2021
7
August, 2020
7
March, 2020
6
February, 2021
3
October, 2022
1
May, 2021
Available data
69
fastq
16
bigWig
8
tsv
6
bam
4
bed narrowPeak
3
bedpe bed3+
3
cool
3
hic
Organism
106
Homo sapiens
Biosample type
72
primary cell
30
tissue
4
cell line
Organ
106
pancreas
76
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
72
HPAP
34
T1D
Genome assembly (visualization)
16
GRCh38
9
hg19
Lab
72
Klaus Kaestner, Upenn
26
Kyle Gaulton, UCSD
8
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
3
audit script error
award.project!
AMP
month_released!
May, 2022
BIOSAMPLE
ASSAY
106 results
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total RNA-seq
ATAC-seq
snATAC-seq
WGBS
ChIP-seq
Hi-C
primary cell
pancreatic alpha cell
42
7
6
1
pancreatic beta cell
11
3
1
pancreatic acinar cell
1
tissue
islet of Langerhans
7
11
6
2
pancreas
4
cell line
EndoC_BH1
2
2
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