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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
5
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
29
DNA accessibility
5
Transcription
Date released
23
February, 2023
17
May, 2021
16
January, 2021
Available data
bam
96
bigWig
96
tsv
Organism
56
Homo sapiens
Biosample type
27
tissue
24
primary cell
5
cell line
Organ
26
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
56
T1D
AMP
Lab
324
Klaus Kaestner, Upenn
56
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
AMP-T2D consortium
1
ITG
Audit category:
1
inconsistent ontology term
award.project!
AMP
target.investigated_as!
histone modification
files.file_type!
bam
BIOSAMPLE
ASSAY
56 results
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snATAC-seq
pCHi-C
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
tissue
islet of Langerhans
6
11
5
pancreas
4
thymus
1
primary cell
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 11 more…
cell line
EndoC_BH1
3
2
See all biosamples
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