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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
464
total RNA-seq
118
ChIP-seq
23
ATAC-seq
6
WGBS
3
DNase-seq
3
pCHi-C
2
Capture-C
2
small RNA-seq
1
RNA microarray
Assay category
466
Transcription
118
DNA binding
26
DNA accessibility
6
DNA methylation
Target of assay
70
histone
70
histone modification
40
broad histone mark
34
transcription factor
29
narrow histone mark
14
control
4
RNA binding protein
2
chromatin remodeller
Date released
452
February, 2021
125
August, 2017
October, 2018
14
February, 2023
10
July, 2019
5
August, 2021
4
October, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
January, 2018
1
June, 2019
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
534
bam
533
bigWig
463
tsv
75
fastq
53
bed narrowPeak
22
tagAlign
19
bed bed3+
8
bigBed narrowPeak
5
bed bed3
4
bed bedgraph
4
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
621
Homo sapiens
Biosample type
524
tissue
97
in vitro differentiated cells
primary cell
1
stem cell
Organ
777
liver
622
connective tissue
547
pancreas
466
adipose tissue
380
heart
317
kidney
264
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
622
AMP
Genome assembly (visualization)
550
hg19
529
GRCh38
Lab
618
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
6
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
award.project!
HPAP
assay_title!
FAIRE-seq
month_released!
October, 2018
biosample_type!
primary cell
BIOSAMPLE
ASSAY
622 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
Capture-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
white adipose tissue
12
subcutaneous adipose tissue
7
1
1
1
+ See 4 more…
in vitro differentiated cells
adipocyte
5
67
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
stem cell
mesenchymal stem cell
1
See all biosamples
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